Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

Miho Kaneko; Loan Phuong Do; Yen Hai Doan; Toyoko Nakagomi; Punita Gauchan; Chantal Ama Agbemabiese; Anh Duc Dang; Osamu Nakagomi

doi:10.1007/s00705-018-3836-4

Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

Miho Kaneko
, Loan Phuong Do
, Yen Hai Doan
, Toyoko Nakagomi
, Punita Gauchan
, Chantal Ama Agbemabiese
, Anh Duc Dang
, Osamu Nakagomi

Nagasaki University
National Institute of Hygiene and Epidemiology
National Institute of Infectious Diseases

Research output: Contribution to journal › Article › peer-review

15 Citations (Scopus)

Abstract

Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.

Original language	English
Pages (from-to)	2261-2263
Number of pages	3
Journal	Archives of Virology
Volume	163
Issue number	8
DOIs	https://doi.org/10.1007/s00705-018-3836-4
Publication status	Published - 1 Aug 2018
Externally published	Yes

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SDG 3 Good Health and Well-being

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10.1007/s00705-018-3836-4

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@article{220b0968094a4117927ae8cd1c58a61d,

title = "Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam",

abstract = "Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.",

author = "Miho Kaneko and Do, \{Loan Phuong\} and Doan, \{Yen Hai\} and Toyoko Nakagomi and Punita Gauchan and Agbemabiese, \{Chantal Ama\} and Dang, \{Anh Duc\} and Osamu Nakagomi",

note = "Publisher Copyright: {\textcopyright} 2018, Springer-Verlag GmbH Austria, part of Springer Nature.",

year = "2018",

month = aug,

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doi = "10.1007/s00705-018-3836-4",

language = "English",

volume = "163",

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T1 - Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

AU - Kaneko, Miho

AU - Do, Loan Phuong

AU - Doan, Yen Hai

AU - Nakagomi, Toyoko

AU - Gauchan, Punita

AU - Agbemabiese, Chantal Ama

AU - Dang, Anh Duc

AU - Nakagomi, Osamu

PY - 2018/8/1

Y1 - 2018/8/1

N2 - Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.

AB - Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.

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U2 - 10.1007/s00705-018-3836-4

DO - 10.1007/s00705-018-3836-4

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AN - SCOPUS:85045056134

SN - 0304-8608

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JF - Archives of Virology

IS - 8

ER -

Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

Abstract

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